Twigstats functions |
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Function to calculate f2 statistics from Relate trees for pairs of populations specified in poplabels. |
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Function to calculate f2 statistics from plink files, ascertained using mutation ages in Relate trees. |
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Function implementing the F4-ratio statistic |
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Function to compute a theoretical z-score given source split times and admixture proportions. |
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TwigScan functions |
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Function implementing TwigScan |
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Function to calculate Fst from Relate trees for pairs of populations specified in poplabels. |
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Chromosome painting functions |
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Chromosome painting using genealogies. |
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Function to compute genome-wide copying proportions. |
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Function to run an NNLS on genome-wide copying proportions to estimate admixture proportions. |